Tutorial 1: How to create a SummarySet and a DataSet3 years ago
SummarySet | Create a Summaryset from a GWAS vcf file | DataSet
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Tutorial 6: Remap genomic coordinates to a different genome assembly3 years ago
Tutorial 4: Meta analysis3 years ago
Tutorial 5: Alternative regional genotype-phenotype map example, with meta-analyses included3 years ago
1. Setting the metadata | 2. HMGCR (3-hydroxy-3-methylglutaryl-CoA reductase) gene region | 2.1. Meta-analysis for the chd trait | 2.2. Creating a dataset for all the traits | 2.3. Finemapping with SusieR | 2.4. Colocolisation with hypercoloc | 3. PCSK9 (proprotein convertase subtilisin/kexin type 9) gene region | 3.1. Meta-analysis for the chd trait | 3.2. Creating a dataset for all the traits | 3.3. Finemapping with SusieR | 3.4. Colocolisation with hypercoloc | 4. NPC1L1 (NPC1 like intracellular cholesterol transporter 1) gene region | 4.1. Meta-analysis for the chd trait | 4.2. Creating a dataset for all the traits | 4.3. Finemapping with SusieR | 4.4. Colocolisation with hypercoloc | 5. LPA (Lipoprotein(A)) gene region | 5.1. Meta-analysis for the chd trait | 5.2. Creating a dataset for all the traits | 5.3. Finemapping with SusieR | 5.4. Colocolisation with hypercoloc
Strategy3 years ago
Objectives | Data structures | Work flow | Implementation | Controlled fields | Design | Variantid
Tutorial 2: MR analysis3 years ago
Tutorial 3: Regional genotype-phenotype map3 years ago